![]() ![]() ![]() Run("iterative PIV(Cross-correlation).", "piv1=64 piv2=32 piv3=0 what= noise=0. Run("Images to Stack", "method= name= title=-1 use keep") ![]() Run("Bandpass Filter.", "filter_large=120 filter_small=3 suppress=None tolerance=5 autoscale saturate") / make dialog window with instructions /// the v -button measures the velocities corresponding to the line or segmented line. Select the 'Velocity Measurement Tool' toolset from the > button of the ImageJ launcher. Run("Bio-Formats Importer", "open=strainpath autoscale color_mode=Default view=Hyperstack stack_order=XYCZT") To install the tools, drag the link VelocityMeasurementTool.txt to the ImageJ launcher window, save it under macros/toolsets in the ImageJ installation and restart ImageJ. Run("Bio-Formats Importer", "open=relaxpath autoscale color_mode=Default view=Hyperstack stack_order=XYCZT") Run("Bio-Formats Importer", "open=DICpath autoscale color_mode=Default view=Hyperstack stack_order=XYCZT") Please see my code below - the part I’m stuck on is demarcated ///like this/// I can do most of this, but I can’t see how to open a dialog and have a while loop check that the dialog is still open. This technique, mainly used in acoustics or in fluids. The plugin works using the PIV method, which is the most basic technique for optic flow. This plugin calculates the optic flow for each pair of images made with the given stack. I want to be able to open a dialog that asks the user to define the locations of one or more cells in the image (with the mouse), creates square ROIs of defined size centered on each point and saves them to the ROI manager, and then continues the macro when the “ok” button is pushed. This is an archive of the old MediaWiki-based ImageJ wiki. I’m trying to write a macro to streamline my traction force analysis. ![]()
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